Dear Szilárd， Thank you very much. I removed -xHOST from CFLAGS and FFLAGS, and now it runs correctly. As for Intel Compile 2011 sp1 + openmpi on my cluster, mpif90 and mpicc give "segmentation fault" error message. Best regards,
Ye 2011-10-25 From： Szil醨d P醠l Date： 2011-10-25 03:42:17 To： Discussion list for GROMACS users CC： Subject： Re: [gmx-users] failure during compiling gromacs 4.5.5 Hi, The error messages are all referring to SSE 4.1 packed integer min/max operations not being recognized. I assume that these were enabled by the "-xHOST" compiler option, and icc automatically generated these instructions - the files it's complaining about are even temporary files. Could it be that you have a broken installation of Intel Compilers on your cluster? You could check if it works if you remove -xHOST or explicitly state -xSSE4.1. Just for curiosity, what are the issues with the Intel Compiler 2011 (I assume that's 12.x) + OpenMPI? Cheers, -- Szilárd On Mon, Oct 24, 2011 at 4:53 PM, Ye MEI <y...@itcs.ecnu.edu.cn> wrote: > Dear Gromacs users, > > I am trying to install gromacs on my cluster using Intel Compiler 11.1.072 > and FFTW3. But I met the following error message > icc -DHAVE_CONFIG_H -I. -I../../../src -I/usr/include/libxml2 > -I../../../include -I/usr/local/include -xHOST > -I/home/users/ymei/software/fftw3/intel/include -pthread -I./include -MT > type.lo -MD -MP -MF .deps/type.Tpo -c type.c -o type.o > /tmp/iccLPSVQqas_.s: Assembler messages: > /tmp/iccLPSVQqas_.s:92: Error: no such instruction: `pmaxsb %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:100: Error: no such instruction: `pmaxsb (%r8,%rdx),%xmm0' > /tmp/iccLPSVQqas_.s:228: Error: no such instruction: `pminsb %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:236: Error: no such instruction: `pminsb (%r8,%rdx),%xmm0' > /tmp/iccLPSVQqas_.s:2559: Error: no such instruction: `pmaxsd %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:2567: Error: no such instruction: `pmaxsd > (%rdx,%r9,4),%xmm0' > /tmp/iccLPSVQqas_.s:2709: Error: no such instruction: `pminsd %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:2717: Error: no such instruction: `pminsd > (%rdx,%r9,4),%xmm0' > /tmp/iccLPSVQqas_.s:2989: Error: no such instruction: `pmulld %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:2997: Error: no such instruction: `pmulld > (%rdx,%rax,4),%xmm0' > /tmp/iccLPSVQqas_.s:7009: Error: no such instruction: `pmaxsb %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:7017: Error: no such instruction: `pmaxsb > (%r8,%rdx),%xmm0' > /tmp/iccLPSVQqas_.s:7145: Error: no such instruction: `pminsb %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:7153: Error: no such instruction: `pminsb > (%r8,%rdx),%xmm0' > /tmp/iccLPSVQqas_.s:9313: Error: no such instruction: `pmaxuw %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:9321: Error: no such instruction: `pmaxuw > (%rdx,%r9,2),%xmm0' > /tmp/iccLPSVQqas_.s:9463: Error: no such instruction: `pminuw %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:9471: Error: no such instruction: `pminuw > (%rdx,%r9,2),%xmm0' > /tmp/iccLPSVQqas_.s:10621: Error: no such instruction: `pmaxud %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:10629: Error: no such instruction: `pmaxud > (%rdx,%r9,4),%xmm0' > /tmp/iccLPSVQqas_.s:10771: Error: no such instruction: `pminud %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:10779: Error: no such instruction: `pminud > (%rdx,%r9,4),%xmm0' > /tmp/iccLPSVQqas_.s:11051: Error: no such instruction: `pmulld %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:11059: Error: no such instruction: `pmulld > (%rdx,%rax,4),%xmm0' > /tmp/iccLPSVQqas_.s:15514: Error: no such instruction: `pmaxsb %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:15522: Error: no such instruction: `pmaxsb > (%r8,%rdx),%xmm0' > /tmp/iccLPSVQqas_.s:15650: Error: no such instruction: `pminsb %xmm0,%xmm1' > /tmp/iccLPSVQqas_.s:15658: Error: no such instruction: `pminsb > (%r8,%rdx),%xmm0' > make[4]: *** [type.lo] Error 1 > make[4]: Leaving directory > `/home/users/ymei/software/gromacs-4.5.5/src/gmxlib/thread_mpi' > make[3]: *** [all-recursive] Error 1 > make[3]: Leaving directory > `/home/users/ymei/software/gromacs-4.5.5/src/gmxlib' > make[2]: *** [all-recursive] Error 1 > make[2]: Leaving directory `/home/users/ymei/software/gromacs-4.5.5/src' > make[1]: *** [all] Error 2 > make[1]: Leaving directory `/home/users/ymei/software/gromacs-4.5.5/src' > make: *** [all-recursive] Error 1 > > I have never seen this kind of error message before, and I donot know what > to do to solve this problem. Can anyone help me out? > Intel Compiler 2011 is ok. But this version does not work well with my > cluster, especially with openmpi. > > And the following information might be helpful. > > ymei@CLOUD@ECNU:~/software/gromacs-4.5.5> gcc -v > Using built-in specs. > Target: x86_64-suse-linux > Configured with: ../configure --enable-threads=posix --prefix=/usr > --with-local-prefix=/usr/local --infodir=/usr/share/info > --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 > --enable-languages=c,c++,objc,fortran,obj-c++,java,ada > --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.1.2 > --enable-ssp --disable-libssp --disable-libgcj --with-slibdir=/lib64 > --with-system-zlib --enable-shared --enable-__cxa_atexit > --enable-libstdcxx-allocator=new --program-suffix= > --enable-version-specific-runtime-libs --without-system-libunwind > --with-cpu=generic --host=x86_64-suse-linux > Thread model: posix > gcc version 4.1.2 20070115 (SUSE Linux) > > ymei@CLOUD@ECNU:~/software/gromacs-4.5.5> cat /etc/SuSE-release > SUSE Linux Enterprise Server 10 (x86_64) > VERSION = 10 > PATCHLEVEL = 2 > > Thank you in advance. > > Ye > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
