You'll learn far more by discovering it yourself.
I stand by this statement. Perhaps some kind person with sufficient time on
their hands will do your literature searching for you, but I do not, sorry. The
information you need is out there. Start with the primary citation for whatever
force field you want and search databases for citing articles or check out the
references therein. Even Google can pull up very useful results within seconds,
provided you've given sufficiently specific keywords.
-Justin
That's why at the present moment I'm examining different force fields
and their implementation to the different systems. Could you recomend me
some survey arcticle when I could find something usefull for this ? In
particular I wounder to know about parametrisation for the membrane
systems? Previosly I've found that charmm ff is ,ost accurasy in the
case of such examination but I've not been able to rapametrise my
bilayers via this ff yet ;x
On other hand I have not difficulties with GROMOS ff for different
systems ( e.g I've obtained very stabile systems durins some ns of
simulations but I dont know about accuracy of the parametrisation of
this ff in the case of membrane system for example .
Finally I'm looking for tutorial for simulation of the pure lipids. E.g
I want to simulate of different physical events on my membrane ( e.g I
want to overkill my membrane by hyperpolarisation or other electrostatic
effects emerged on the different steps of my simulation ) Could you also
recomend me methodical literature for this styding?
James
--
==============================__==========
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
http://www.bevanlab.biochem.__vt.edu/Pages/Personal/justin
<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin>
==============================__==========
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--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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