Justin > >> > I can't access the file, so I don't know. 20 iterations still doesn't > sound like enough for the tutorial system, unless you shrunk faster than > what was recommended.
20 iteration was a simple example. It means that many iterations produced more accuracy results in comparison to previous one :) Its only one not understood for me. After 20 iterations I've obtained S per lipid value= 0.2 nm^2. It's equal to 2 A^2 ( 1A=0.1 nm) http://en.wikipedia.org/wiki/Angstrom Why you told in the tutorial that experimental value was 65 A^2 ? > > >> > Perhaps the value you have set in vdwradii.dat for C radii is too large > for genbox to function properly. > It seems that this is true because I've defined vdv radii as 0.4 instead of 0.375. Could the differense in the 0.015 result in the error? James
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