The website has been updated to fit a CG tutorial starting monday in
Lausanne.
The manner of the construction you describe in your email is not the
proper way to do it!
The new script is doing it properly.
If you want the old script to only generate the elastic network (as it
seems from your email) you may have it or use the scripts from the
ElNeDyn approach.
XAvier.
On Oct 14, 2011, at 5:58 PM, Li, Hualin wrote:
Dear all,
I am using martini force field to generate elastic network
for my protein. I generate a list of distance between all beads
within a certain distance by:
genrestr -f ***.gro -n index.ndx -constr -o constraints
getting the constraints.itp file and will continue with the
2nd step by using a script:
./select_restr.pl constraints.itp 0.5 0.9 500
However, the martini forcefield developer seems to update
their website yesterday and I can't find the select_restr.pl any
more and in the new script they provide ( martinize.py), -elastic
to write elastic bonds is not working yet. Could some one provide
me the old script "select_restr.pl" please?
Many thanks.
---hualin--
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