On 21/09/2011 7:27 PM, zhongjin wrote:
Dear GMX users:
While I am installing gmx4.5.5, an error occured after "make" command :
cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused
-msse2 -funroll-all-loops -std=gnu99 -pthread -I./include -o
.libs/grompp grompp.o -L/home/hzj1000/software/fftw/lib
./.libs/libgmxpreprocess.so
/home/hzj1000/gromacs-4.5.5/src/mdlib/.libs/libmd.so
../mdlib/.libs/libmd.so
/home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so
../gmxlib/.libs/libgmx.so -ldl -lnsl -lm -Wl,--rpath
-Wl,/home/hzj1000/software/GMX/gromacs4.5.5/lib
/home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so: undefined
reference to `pthread_setaffinity_np'
collect2: ld returned 1 exit status
make[3]: *** [grompp] Error 1
make[3]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src/kernel'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src'
This shouldn't happen. What compiler and hardware? configure or CMake?
What command lines?
Mark
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