Hello,
I would like to manually place a counterion into my system with the
genion command for which I am pretty sure I will need an index file. My
question
is how to properly select the specific water atoms / or SOL residue(?) number
(that I get from my pdb or gro file) so that it comes up as an option when I
run genion. I looked at the make_ndx options, but they weren't too clear to me.
Guidance appreciated.
Thanks, Marc--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
