On 19/09/2011 2:02 AM, Steven Neumann wrote:
Hi Gromacs Users,
Can anyone explain me why in g_bond the distance is takes <= 3.5nm.

If you mean g_hbond, and are using units incorrectly, 0.35nm would be a characteristic distance cut-off for deciding whether a hydrogen bond might exist....

It is said that it comes from the first minimum o RDF of Oxygen atoms in SPC water model. I am sorry, but I just do not catch this. Thank you in advance.

Said where? About what? :)

Mark

--
gmx-users mailing list    gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Reply via email to