On 14/09/2011 5:29 PM, madhumita das wrote:
Hi Gromacs users,

I am doing the protein lipid system packing step and thus shrinking and minimizing the system alternately but after first minimization rest of all minimization steps show E pot=nan and no minimization step occurs in the em.log file. How to get rid of this problem? Please help.

It is likely that your system is http://www.gromacs.org/Documentation/Terminology/Blowing_Up

Mark
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