R is any distance from the surface of the protein. On Mon, Sep 12, 2011 at 6:31 PM, Mark Abraham <mark.abra...@anu.edu.au>wrote:
> On 13/09/2011 9:29 AM, E. Nihal Korkmaz wrote: > >> Dear all, >> >> Is there any function to get the Volume around a peptide/protein as a >> function of R? >> The problem is g_rdf -surf doesn't have a volume correction factor, so my >> aim is to apply a volume correction factor manually by having V(R) around >> the protein. >> > > You haven't said what R is, but g_sas will calculate some volumes. > > Mark > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> > -- Elif Nihal Korkmaz Research Assistant University of Wisconsin - Biophysics Member of Qiang Cui & Thomas Record Labs 1101 University Ave, Rm. 8359 Madison, WI 53706 Phone: 608-265-3644 Email: kork...@wisc.edu
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