Use g_dist tool.

On Sun, Aug 28, 2011 at 8:38 AM, Sajad Ahrari <sajadahr...@yahoo.com> wrote:

> Dear users,
> is there any command in Gromacs to show fluctuations of distance, between
> mass center for two groups of amino-acids in  a protein, over time?
> thanks,
> sajad
>
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