Dear all
I am running a MD (Gromacs - 4.5.3) in VSMP cluster with 24nodes.
I am writing log files for different ns (1-10) in different files i.e. different
files for each nano second . The performance goes like following:
--------------------------
for 1st ns:
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 1444.719 85.902 3.946 6.082
Finished mdrun on node 0 Tue Aug 16 21:46:02 2011
at 2nd ns:
(Mnbf/s) (GFlops) (ns/day) (hour/ns)
Performance: 560.393 33.322 1.531 15.679
Finished mdrun on node 0 Wed Aug 17 13:27:38 2011
------------------
and in case of 3rd ns:
it didn't complete the all steps and went in next.
Is it the problem with the gromacs?
regards
anupam
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