I am doing the protein in lipid tutorial . http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/02_topology.html
Pack the lipids around the protein, i dont see where is the script perl inflategro.pl I googled It and did not find it. Can you please send me the script or tell me where I can find it Also I used the cat KALP_newbox.gro dppc128_whole.gro > system.gro so I checked the system.gro in vmd and did not load anything. I was able to vew the KALP_newbox.gro and the dppc128_whole.gro but not the system.gro do I have to organize the system.gro because I can see that the protein in numbered from 1 to … then the lipids start from 1 ….end .. will that cause a problem Thank you
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