vidhya sankar wrote:
Dear Justin, Thank you fro your previous reply
In SMD c an i Compare Profiles (curves) of pullf.xvg
with hydrophobic and Hydrophilic interaction Is there is any relation ?
it means will pulling force vary with respect to nature of interaction
between pulling group and fixed group in SMD? Kindly explain
The only way to answer this question is to watch the trajectories. You cannot
blindly compare two force-time curves and necessarily expect any relation
between different systems. The forces that evolve are path-dependent, so you
have to watch the trajectories to see what interactions are broken as the
pulling force is applied.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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