cd /usr/lib (or locate libfftw3.so.3.2.4)
you may notice the /usr/lib/libfftw3.so.3.2.4 make a link, sudo ln -sf /usr/lib/libfftw3.so.3.2.4 /usr/lib/libfftw3.so.3 then shall be no problem. On Thu, Aug 11, 2011 at 10:50 PM, Mark Abraham <mark.abra...@anu.edu.au> wrote: > On 12/08/2011 12:38 AM, afsaneh maleki wrote: > > Hi, > > My characteristics computer: > > > > Root at …fftw-3.2.2]# uname -a > > Linux localhost.localdomain 2.6.31.5-127.fc12.i686.PAE #1 SMP Sat Nov 7 > 21:25:57 EST 2009 i686 i686 i386 GNU/Linux > > > > To install FFTW version 3.2.2. > > I used the following commands: > > Root at …fftw-3.2.2]# ./configure --enable-threads --enable-float > --enable-shared > > Root at …fftw-3.2.2]# make > > Root at …fftw-3.2.2]# make install > > After using “make” and “make install”, it get me the following text at end: > > make[3]: Leaving directory `/home/afsaneh/m/fftw-3.2.2/tools' > > make[2]: Leaving directory `/home/afsaneh/m/fftw-3.2.2/tools' > > Making all in m4 > > make[2]: Entering directory `/home/afsaneh/m/fftw-3.2.2/m4' > > make[2]: Nothing to be done for `all'. > > make[2]: Leaving directory `/home/afsaneh/m/fftw-3.2.2/m4' > > make[1]: Leaving directory `/home/afsaneh/m/fftw-3.2.2' > > > > .......................... > > To install gromacs version 4.5.1 > > root@localhost gromacs-4.5.1]#./configure > > You aren't configuring to use fftw3. You should probably use the same > --enable-shared setting for both FFTW and GROMACS. > > * On most platforms you can save 10X space with dynamic libraries, although > > the binaries might be less portable. Why not try --enable-shared ? > > > > [root@localhost gromacs-4.5.1]#make > > [root@localhost gromacs-4.5.1]#make install > > [root@localhost gromacs-4.5.1]# make links > > cd /usr/local/gromacs/bin && programs=`ls` && cd /usr/local/bin && \ > > for i in $programs; do \ > > (test ! -f $i && ln -s /usr/local/gromacs/bin/$i . ; exit 0); > \ > > done > > > > when i used each command with” –h” or “–help” I obtain the followinf error: > > [afsaneh@localhost ~]$ g_analyze -h > > g_analyze: error while loading shared libraries: libfftw3f.so.3: cannot open > shared object file: No such file or directory > > Sounds like somehow the make environment could find the FFTW libraries, but > the execution environment could not. Do heed the advice here > http://www.gromacs.org/Downloads/Installation_Instructions#Getting_access_to_GROMACS_after_installation > (and the rest of the instructions, too) > > Mark > > > > [afsaneh@localhost ~]$ editconf -h > > editconf: error while loading shared libraries: libfftw3f.so.3: cannot open > shared object file: No such file or directory > > > > How to solve this problem? > > > > Best wishes, > > Afsaneh > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Best Regards, lina -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
