Hi Gromacs Users, I am using the gromacs analysing tools to analyze my DCD file produced by NAMD. I set up the VMD_PLUGIN_PATH before running however I got the error that the VMD_PLUGIN_PATH was not set up. Can anyone give me a hand? Please see below the details. Thanks for the help
export VMD_PLUGIN_PATH=/home/pet/vmd/1.9/plugins/molfile g_gyrate_d -f protein.dcd -s ../IN/protein.pdb ############################################ The file format of protein.dcd is not a known trajectory format to GROMACS. Please make sure that the file is a trajectory! GROMACS will now assume it to be a trajectory and will try to open it using the VMD plug-ins. This will only work in case the VMD plugins are found and it is a trajectory format supported by VMD. No VMD Plugins found Set the environment variable VMD_PLUGIN_PATH to the molfile folder within the VMD installation. The architecture (e.g. 32bit versus 64bit) of Gromacs and VMD has to match. ------------------------------------------------------- Program g_gyrate_d, VERSION 4.5.3 Source code file: trxio.c, line: 867 Fatal error: Not supported in read_first_frame: protein.dcd For more information and tips for troubleshooting, please check the GROMACS website at http://www.gromacs.org/Documentation/Errors ------------------------------------------------------- "Lets Kill the Fucking Band" (Tom Savini - From Dusk til Dawn) ############################################ -- Cheers, Paul
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