Dear GMX users, I am trying to center my protein at the center of box using editconf. When I view the same using ngmx, the protein seems to lie outside the box
neweditconf -f alapdb.pdb -bt cubic -o boxpdb.pdb -c -center -0.156 -0.061 0.084 -d 1.5 this one works, but the molecule is shifted. neweditconf -f alapdb.pdb -bt cubic -d 1.5 -o try.pdb I want my molecule (geometrical ) center to be the center of the box with -d 1.5. Best, nahren
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