Hi all I used the genion to add a concentration and to neutalize the system in the same time by using the
*genion -s file.tpr -conc 0.2 -neutral -o file.gro -random so it did add the NA and Cl but it did not neutralize the system, the net charge of the system still the same negative. so i tried to use the genion seperate to neutralize the charge using the file.tpr and out file as the file.gro, however it reset the file.gro and i lose the NA And CL ions added for the concentration. any suggestions *
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