Max Watson wrote:
I would like to replicate the tilted DPPC gel phase from Marrink's
website laterally, so that I have 4 times the area. But since the
coupling is anisotropic, there are 9 box dimensions, and the triclinic
geometry confuses me.
I have seen that you can use editconf and -translate, followed by
merging the .gro files when using orthogonal box lengths Lx, Ly Lz. But
what are the new dimensions of my replicated triclinic system?
Use genconf -nbox to replicate the system in any way you like.
Also, if anyone can tell me about a good website or book that describes
triclinic geometry using lots of pictures, I'd really appreciate it.
A few minutes on Google turns up tons of images. There's also a bit in the
manual.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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