On 8/07/2011 4:52 PM, bipin singh wrote:
Hello,
My protein have two identical chains A and B and the backbone rmsd
between the two chains is 0.33A.
My problem is that how to select(on what basis) one chain out of the
two for md simulation, whether the selection of one of the two
chains(A or B) will make any differences to the final results.
Step back. Does it even make sense to use only one? Dimers are usually
that way for a reason.
Mark
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