----- Forwarded Message ----- From: Saeid Akbarshahi <saeidakbarsh...@yahoo.com> To: "gmx-users@gromacs.org" <gmx-users@gromacs.org> Sent: Wednesday, July 6, 2011 10:44 PM Subject: Ion distribution around Cl fix Dear All Question : Problem : Distribution of sodium and chloride ions than chlorine fixed placein center of box simulation I wanted to ask which graphs the density of sodium is correct ?Is ita very high Peak in graph Na than Cl fix Box : 2.65 *2.65 *2.65 nm force field : AMBER99SB-ILDN Number of Na : 10 Number of Cl : 9 Number of Cl fix : 1 Time : 4 ns Water : TIP3P Kind Regard saeed.akbarshahi
minim_E.mdp
Description: Binary data
nvt.mdp
Description: Binary data
<<attachment: Cl around Cl fix.png>>
<<attachment: Na around Cl fix.png>>
Dear All Problem : Distribution of sodium and chloride ions than chlorine fixed place in center of box simulation I wanted to ask which graphs the density of sodium is correct ? Box : 2.65 *2.65 *2.65 nm force field : AMBER99SB-ILDN Number of Na : 10 Number of Cl : 9 Number of Cl fix : 1 Time : 4 ns Water : TIP3P Kind Regard saeed.akbarshahi
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