I will really appreciate any help of suggestions.I am doing simulation of six monomers of identical helical peptide. the experiment literature say that the peptides in a aqueous solution should form a hexamer. so i have done simulations for the six peptides under normal conditions with T of 300k and the result are two trimer that are perpendicular with each other.
I don't know that to do to get the monomers rearrange and form a heaxamer instead of two trimers. Thank you fatima-ezzahra.
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