Dear Users ! i have tried in generating the -ter option in generating the topology file !
it asks the below if i give the ter option , Select start terminus type for TYR-1 0: NH3+ 1: ZWITTERION_NH3+ 2: NH2 3: None then if i give option 1 it chooses ZWITTERION_NH3+ , i want to make the charge state of the protein as ZWITTERION , in terminal how to do it in command mode thanks in advance balaji
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