Dear users, I did ED analysis for one of the trajectories, when I visualised the trajectory along the first five eigen vectors using g_nmtraj it does not show much movements. It was a simulation of 100 ns. My doubt is when I visualise the trajectory in pymol calculated just after simulation I could observe large movements in certain regions. same regions do have movements in ED trajectory also but not as large as this. Why is this?
Thank you With Regards M. Kavyashree
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