On 06/17/2011 12:18 PM, bharat gupta wrote:
thanks.. I fixed the problem by using the command execstack -c filename
but I have another issue .. I am am preparing the structure for
simulation which is a docked complex containing Phospharylated
tyrosine. I am using Amber 99 force field and update the
residuetypes.dat, aminoacid.rtp, ffbonded.itp files for pTYR but still
the error that "Residue 'PTYR' not found in residue topology database"
... but all the changes I have made then where else could the problem
be ??
Isn't it rather more likely your error is in something you've already
done? Be sure you have followed
http://www.gromacs.org/Documentation/How-tos/Adding_a_Residue_to_a_Force_Field
Mark
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
