Dear gmxers,
We have installed gmx-4.5.4 on one cluster from the source, without any
errors. I can also run mdrun in non-parallel way successful. However, when I
run mdrun in parallel way as follows:
mpimdrun -h
some messages are given:
[node10:03709] mca: base: component_find: unable to open
/public/software/mpi/openmpi1.4-gnu/lib/openmpi/mca_btl_ofud: perhaps a missing
symbol, or compiled for a different version of Open MPI? (ignored)
[node10:03709] mca: base: component_find: unable to open
/public/software/mpi/openmpi1.4-gnu/lib/openmpi/mca_btl_openib: perhaps a
missing symbol, or compiled for a different version of Open MPI? (ignored)
NNODES=1, MYRANK=0, HOSTNAME=node10
What does it mean by saying so? Could you give me some hints for dealing with
it?
Thanks a lot for any reply.
Dr. Chaofu Wu
------------------
Department of Chemistry and Materials Science
Hunan University of Humanities, Science and Technology,
Loudi 417000, the People's Republic of China (P.R. China)
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
