Hi, ALL I met a bizarre in a NVT simulation in which the initial temperature is ridiculously high. Even though I specify the initial temperature to be 200 K.
; GENERATE VELOCITIES FOR STARTUP RUN gen_vel = yes gen_temp = 200.0 gen_seed = 173529 Energies (kJ/mol) Bond LJ (SR) Coulomb (SR) Coul. recip. Potential 7.17894e+01 3.25101e+05 -3.75274e+05 - 3.13877e+05 -3.63978e+05 Kinetic En. Total Energy Temperature Pressure (bar) 7.97000e+04 -2.84278e+05 1.00007e+04 2.75198e+06 The force field I used is called CLAYFF( http://www.sklogwiki.org/SklogWiki/index.php/CLAYFF_force_field), in which all atoms except hydroxyl groups interact through non-bonded vdW and electrostatic interactions. What's more strange is that after 5 ps, the system converted from a ordered layer structure into a disordered structure, like melting, although temperature goes to 200 K. Any comments? Thanks in advance ! Guozhen
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists