vidhya sankar wrote:
Dear justin,
Thank you for your previous reply.
When i study the effect of ionic strength on stability
Which Parameter of Electrostatics Should i use? . If I use usual PME
Then will it interfere it with result?.
Because My system has Non zero charge I went through a Literature In
that They used The
"Cut-off" Coulomb Type But When I use the Same cut-off for my system It
shows artifacts
warning
Thanks In advance
Mark already answered this earlier:
http://lists.gromacs.org/pipermail/gmx-users/2011-June/062146.html
If your system has a non-zero charge I see no reason why you can't use
counterions to balance the charge and increase the ionic strength to varying
degrees from the neutral baseline.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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