sarah k wrote:
Dear Bharat,
You can use the Dundee PRODRG server to prepare the topology/parameter
of any structure for GROMACS or some other programs. Here is the link:
Be careful with PRODRG, its results are not good (posted for the second time in
15 minutes):
http://www.gromacs.org/Downloads/Related_Software/PRODRG#Tips
-Justin
http://davapc1.bioch.dundee.ac.uk/prodrg/
you should tag the phosphate group and draw the structure of
phosphotyrosine and load it. Good Luck!
Best Regards,
Sarah Keshavarz
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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