yes, you can make virtual sites interact with only specific sites by using Energy Exclusion between energy groups. This can be done by defining energy groups for virtual sites and other atoms, then exclude or include the non-bonded interactions between them accordingly...
On Thu, May 5, 2011 at 7:30 AM, Gavin Melaugh <gmelaug...@qub.ac.uk> wrote: > Hi All > > Is it possible to have a virtual site interact with only specific atoms > and not interact at all with everything else? > > > Cheers > > Gavin > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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