On 15/04/2011 12:29 AM, pawan raghav wrote:
I have already posted this error report on 6 Dec 2010 but still have
not getting any solution. So I am thankful if any one can rectify the
solution of installation problem i.e. While installing gromacs-4.5.3 I
got an error on executing make command. I am installing this gromacs
version on cygwin. The error written below, please tell me solution of
this error.
Apparently you have some kind of XDR library linking issue. Perhaps that
is caused by some other library floating around. GROMACS has its own
version if the system one is broken, but perhaps some Windows DLL is
confusing things.
My Cygwin install builds with cmake perfectly. I haven't tried configure
in a long while.
Mark
Creating library file: .libs/libgmx.dll.a
.libs/checkpoint.o:checkpoint.c:(.text+0xcd): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x13c): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x236): undefined reference to
`_xdr_double'
.libs/checkpoint.o:checkpoint.c:(.text+0x256): undefined reference to
`_xdr_vector'
.libs/checkpoint.o:checkpoint.c:(.text+0x3f0): undefined reference to
`_xdr_float'
.libs/checkpoint.o:checkpoint.c:(.text+0x408): undefined reference to
`_xdr_vector'
.libs/checkpoint.o:checkpoint.c:(.text+0x64e): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0xfad): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0xff0): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x10a3): undefined reference to
`_xdr_double'
.libs/checkpoint.o:checkpoint.c:(.text+0x10bb): undefined reference to
`_xdr_vector'
.libs/checkpoint.o:checkpoint.c:(.text+0x127d): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x12c0): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x1372): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x138a): undefined reference to
`_xdr_vector'
.libs/checkpoint.o:checkpoint.c:(.text+0x1fb9): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x24cf): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x256a): undefined reference to
`_xdr_string'
.libs/checkpoint.o:checkpoint.c:(.text+0x2606): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x2642): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x26d4): undefined reference to
`_xdr_string'
.libs/checkpoint.o:checkpoint.c:(.text+0x2755): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x2791): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x27de): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x283a): undefined reference to
`_xdr_u_char'
.libs/checkpoint.o:checkpoint.c:(.text+0x287a): undefined reference to
`_xdr_u_char'
.libs/checkpoint.o:checkpoint.c:(.text+0x28ba): undefined reference to
`_xdr_u_char'
.libs/checkpoint.o:checkpoint.c:(.text+0x28fa): undefined reference to
`_xdr_u_char'
.libs/checkpoint.o:checkpoint.c:(.text+0x293a): undefined reference to
`_xdr_u_char'
.libs/checkpoint.o:checkpoint.c:(.text+0x297a): more undefined
references to `_xdr_u_char' follow
.libs/checkpoint.o:checkpoint.c:(.text+0x2f00): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x2f8e): undefined reference to
`_xdr_string'
.libs/checkpoint.o:checkpoint.c:(.text+0x2ffc): undefined reference to
`_xdr_string'
.libs/checkpoint.o:checkpoint.c:(.text+0x3070): undefined reference to
`_xdr_string'
.libs/checkpoint.o:checkpoint.c:(.text+0x30e4): undefined reference to
`_xdr_string'
.libs/checkpoint.o:checkpoint.c:(.text+0x3158): undefined reference to
`_xdr_string'
.libs/checkpoint.o:checkpoint.c:(.text+0x31cc): more undefined
references to `_xdr_string' follow
.libs/checkpoint.o:checkpoint.c:(.text+0x3236): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x328f): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x32d3): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x334a): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x3412): undefined reference to
`_xdr_double'
.libs/checkpoint.o:checkpoint.c:(.text+0x3457): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x34b1): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x3501): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x3551): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x358e): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x35d2): more undefined
references to `_xdr_int' follow
.libs/checkpoint.o:checkpoint.c:(.text+0x392f): undefined reference to
`_xdr_string'
.libs/checkpoint.o:checkpoint.c:(.text+0x3a31): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x3a75): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x4cb4): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x5216): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x6c90): undefined reference to
`_xdr_int'
.libs/checkpoint.o:checkpoint.c:(.text+0x76ca): more undefined
references to `_xdr_int' follow
.libs/enxio.o:enxio.c:(.text+0xc72): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xc91): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xcc3): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xcf9): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xd18): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xd40): more undefined references to
`_xdr_string' follow
.libs/enxio.o:enxio.c:(.text+0xdba): undefined reference to `_xdr_int'
.libs/enxio.o:enxio.c:(.text+0xdd7): undefined reference to `_xdr_int'
.libs/enxio.o:enxio.c:(.text+0xe62): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xe81): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xeb3): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xf43): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xf62): undefined reference to `_xdr_string'
.libs/enxio.o:enxio.c:(.text+0xfe4): more undefined references to
`_xdr_string' follow
.libs/gmxfio.o:gmxfio.c:(.text+0x728): undefined reference to
`_xdrstdio_create'
.libs/gmxfio.o:gmxfio.c:(.text+0xd39): undefined reference to
`_xdrstdio_create'
.libs/xdrd.o:xdrd.c:(.text+0x30): undefined reference to `_xdr_int'
.libs/xdrd.o:xdrd.c:(.text+0x40): undefined reference to `_xdr_int'
.libs/xdrd.o:xdrd.c:(.text+0x81): undefined reference to `_xdr_float'
.libs/xtcio.o:xtcio.c:(.text+0xb7): undefined reference to `_xdr_int'
.libs/xtcio.o:xtcio.c:(.text+0xd8): undefined reference to `_xdr_int'
.libs/xtcio.o:xtcio.c:(.text+0x13c): undefined reference to `_xdr_int'
.libs/xtcio.o:xtcio.c:(.text+0x18c): undefined reference to `_xdr_float'
.libs/xtcio.o:xtcio.c:(.text+0x23c): undefined reference to `_xdr_float'
.libs/xtcio.o:xtcio.c:(.text+0x257): undefined reference to `_xdr_float'
.libs/xtcio.o:xtcio.c:(.text+0x272): undefined reference to `_xdr_float'
.libs/xtcio.o:xtcio.c:(.text+0x28d): undefined reference to `_xdr_float'
.libs/xtcio.o:xtcio.c:(.text+0x2a8): more undefined references to
`_xdr_float' follow
.libs/libxdrf.o:libxdrf.c:(.text+0x51f): undefined reference to `_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x537): undefined reference to `_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x54f): undefined reference to `_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x575): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x58d): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x5a5): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x5bd): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x5d5): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x5ed): more undefined references to
`_xdr_float' follow
.libs/libxdrf.o:libxdrf.c:(.text+0xacd): undefined reference to `_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0xbfc): undefined reference to `_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x2159): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x2190): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x247c): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x24b2): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x2505): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x25b3): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x262e): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x2642): undefined reference to
`_xdr_vector'
.libs/libxdrf.o:libxdrf.c:(.text+0x26a0): undefined reference to
`_xdr_float'
.libs/libxdrf.o:libxdrf.c:(.text+0x26b8): undefined reference to
`_xdr_vector'
.libs/libxdrf.o:libxdrf.c:(.text+0x2786): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x27a8): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x27c7): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x27e2): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x27fd): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x2a24): more undefined references to
`_xdr_int' follow
.libs/libxdrf.o:libxdrf.c:(.text+0x3803): undefined reference to
`_xdr_opaque'
.libs/libxdrf.o:libxdrf.c:(.text+0x3852): undefined reference to
`_xdr_opaque'
.libs/libxdrf.o:libxdrf.c:(.text+0x40bd): undefined reference to
`_xdr_int'
.libs/libxdrf.o:libxdrf.c:(.text+0x437a): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x13d): undefined reference to
`_xdr_float'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x194): undefined reference to
`_xdr_double'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x1ce): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x267): undefined reference to
`_xdr_double'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x286): undefined reference to
`_xdr_vector'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x2d7): undefined reference to
`_xdr_u_char'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x325): undefined reference to
`_xdr_u_char'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x342): undefined reference to
`_xdr_u_char'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x35f): undefined reference to
`_xdr_u_char'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x37c): undefined reference to
`_xdr_u_char'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x399): more undefined
references to `_xdr_u_char' follow
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x4ef): undefined reference to
`_xdr_u_short'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x532): undefined reference to
`_xdr_u_char'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x57a): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x5ae): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x5e0): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x84d): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x88c): undefined reference to
`_xdr_string'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x90b): undefined reference to
`_xdr_float'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x92a): undefined reference to
`_xdr_vector'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x970): undefined reference to
`_xdr_double'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x9a6): undefined reference to
`_xdr_double'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x9c2): undefined reference to
`_xdr_float'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xa98): undefined reference to
`_xdr_u_short'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xab7): undefined reference to
`_xdr_u_char'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xad6): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xaed): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xb04): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xb23): undefined reference to
`_xdr_int'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xd30): undefined reference to
`_xdr_float'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xd53): undefined reference to
`_xdr_vector'
.libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xd64): undefined reference to
`_xdr_double'
collect2: ld returned 1 exit status
make[4]: *** [libgmx.la <http://libgmx.la/>] Error 1
make[4]: Leaving directory `/cygdrive/c/gromacs-4.5.3/src/gmxlib'
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory `/cygdrive/c/gromacs-4.5.3/src/gmxlib'
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory `/cygdrive/c/gromacs-4.5.3/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/cygdrive/c/gromacs-4.5.3/src'
make: *** [all-recursive] Error 1
--
Pawan
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