Hi, I have been trying to generate a pdb file using g_cluster with the following command: "g_cluster -s md.tpr -f md.xtc -cl"
It ran O.K. but I am curious the rmsd warning message: The RMSD ranges from 0.0481586 to 0.200779 nm Average RMSD is 0.124039 Number of structures for matrix 5001 Energy of the matrix is 204.264 nm WARNING: rmsd minimum 0 is below lowest rmsd value 0.0481586 Linking structures ** Sorting and renumbering clusters What is that rmsd minimum 0 all about? Thanks for your help in advance. Simon Sham
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