Hirdesh Kumar wrote:
Dear Gromacs Users,
I am new to Gromacs and I am trying to follow the tutorials. For
starting I am following the *KALP15 in DPPC*
tutorial(http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin/gmx-tutorials/membrane_protein/02_topology.html).
But I am unable to locate following files in the Gromacs folder ..
aminoacids.rtp
aminoacids.hdb
aminoacids.c.tdb
aminoacids.n.tdb
aminoacids.r2b
aminoacids.vsd
ff_dum.itp
ffnonbonded.itp
ffbonded.itp
forcefield.itp
ions.itp
spc.itp
watermodels.dat
Please suggest me where can I find the following files...
The tutorial assumes you are using a Gromacs version in the 4.5.x series. If
you are not, the filenames will be completely different. If you are using a
suitable (new) version, the files are located in $GMXLIB/gromos53a6.ff.
-Justin
Thanks and Regards,
Hirdesh
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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