On 6/04/2011 10:29 PM, mohsen ramezanpour wrote:
Dear All
I used mdrun for generating NVT
It crashed and massage was:
Trying to get md5sum: nvt-1.trr: Stale NFS file handle
You have an intermittent problem with your Network File System. For some
reason GROMACS can't keep writing to the same file, because it can't see
it any more. The problem is not anything to do with GROMACS. Consult
your system admins.
Trying to get md5sum: nvt-1.edr: Stale NFS file handle
-------------------------------------------------------
Program mdrun, VERSION 4.5.3-dev-20110310-a52f8-dirty
Source code file:
/home/mohsen/src/gromacs/src/gromacs/gmxlib/checkpoint.c, line: 1287
File input/output error:
Cannot fsync 'nvt-1.trr'; maybe you are out of disk space or quota?
For more information and tips for troubleshooting, please check the
GROMACS
website at http://www.gromacs.org/Documentation/Errors
But I have enough space on my cluster!
Sure... The above is only a guess, but it is often a good one.
it is excellent because I run 5 program with the same nvt.mdp file and
all of them gave above error.
Of course 3 of them ended succesfully although they gave the same
error too.
Is the problem from my mdp file?
No.
Mark
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
