From: anahita [mailto:ana_j0...@yahoo.com] Sent: Friday, April 01, 2011 1:13 PM To: 'gmx-users-requ...@gromacs.org' Subject: protein split over boundary Dear user, Hello, I appreciate if somebody help me. During the simulation of my protein I didn't get any error but after 1ns of MD my molecule was split over boundary in cubic box. it means some part of it enter the other side of the box. At first,For decreasing the cost of simulation, in "editconf" command I set the number "d" on 0.9 to decease the box size. I want to mention that during the calculation my rvdw is 1.4. I want to know instead of problem of visualization, the other things is fine? Best regards. A. johari
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
