On 1/04/2011 10:57 AM, emen...@ucalgary.ca wrote:
Thanks for your promt reply Mark.
Of course I know what is the format, that is implied in my question....

Leaving things to implication is risky. People do misunderstand, unfortunately. Fault in such cases varies :-) If what you actually want is gbr and hct parameters for Martini atom types, everyone can use their time better if you ask specifically about that.

what I would like to know is if anybody has the specific parameters for
the amber forcefield. I will try using the gbr parameters from the sigma
in the  LJ potentials, but  I am not sure about the proper hct (or the
other numbers) hence I am inquiring about this,

That manual section mentions the reference sources for these parameters, which is why I referred to it. Whether there's any established procedure for implicit solvation with Martini is probably a question for literature search and speaking with the Martini developers.

Mark

Cheers.

Eduardo Mendez

Greetings,

I am trying to do Martini Forcefield + Implicit solvation model for a
large system and I need to supply parameters for the
[ implicit_genborn_params ]
section. Which I have not found.

The syntax is

Atomtype sar st pi gbr hct

Can anybody provide me a clue about where I can find these parameters?



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