Hi Justin, I checked carefully. The make command also gave the same error as pasted below. How should I deal this error?
at' follow .libs/libxdrf.o:libxdrf.c:(.text+0x31e3): undefined reference to `_xdr_int' .libs/libxdrf.o:libxdrf.c:(.text+0x340b): undefined reference to `_xdr_int' .libs/libxdrf.o:libxdrf.c:(.text+0x35a6): undefined reference to `_xdr_int' .libs/libxdrf.o:libxdrf.c:(.text+0x3785): undefined reference to `_xdr_int' .libs/libxdrf.o:libxdrf.c:(.text+0x3a01): undefined reference to `_xdr_int' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0xeb): undefined reference to `_xdr_float ' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x126): undefined reference to `_xdr_doub le' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x161): undefined reference to `_xdr_int' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x1ec): undefined reference to `_xdr_u_ch ar' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x22f): undefined reference to `_xdr_u_ch ar' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x265): undefined reference to `_xdr_u_ch ar' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x293): undefined reference to `_xdr_u_ch ar' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x2bf): undefined reference to `_xdr_u_ch ar' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x309): undefined reference to `_xdr_u_sh ort' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x3c4): undefined reference to `_xdr_doub le' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x3ed): undefined reference to `_xdr_vect or' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x518): undefined reference to `_xdr_int' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x56c): undefined reference to `_xdr_int' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x5e1): undefined reference to `_xdr_int' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x60e): undefined reference to `_xdr_int' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x63b): undefined reference to `_xdr_int' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x668): more undefined references to `_xd r_int' follow .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x764): undefined reference to `_xdr_doub le' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x7bd): undefined reference to `_xdr_floa t' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x7d4): undefined reference to `_xdr_vect or' .libs/gmxfio_xdr.o:gmxfio_xdr.c:(.text+0x823): undefined reference to `_xdr_stri ng' Creating library file: .libs/libgmx.dll.a collect2: ld returned 1 exit status make[4]: *** [libgmx.la] Error 1 make[4]: Leaving directory `/cygdrive/d/softwares/bioinformatics/gromacs-4.5.4/s rc/gmxlib' make[3]: *** [all-recursive] Error 1 make[3]: Leaving directory `/cygdrive/d/softwares/bioinformatics/gromacs-4.5.4/s rc/gmxlib' make[2]: *** [all-recursive] Error 1 make[2]: Leaving directory `/cygdrive/d/softwares/bioinformatics/gromacs-4.5.4/s rc' make[1]: *** [all] Error 2 make[1]: Leaving directory `/cygdrive/d/softwares/bioinformatics/gromacs-4.5.4/s rc' make: *** [all-recursive] Error 1 On Wed, Mar 30, 2011 at 1:54 AM, Justin A. Lemkul <jalem...@vt.edu> wrote: > > > Monisha Hajra wrote: > >> Hi All, >> >> I am installing GROMACS using cygwin. >> >> I am following the steps as mentioned : >> http://www.gromacs.org/Downloads/Installation_Instructions/Cygwin_HOWTO >> >> *no 5, make install command give the following error in the end :* >> >> > What was your configuration command? Did "make" work properly? It's odd > that "make install" fails if "make" works. Do you have proper permissions > to install in this directory? Configuration and compilation are done > locally, but installation (if left at default settings) is system-wide. > > The actual error message is above what you have posted here. > > ng' >> Creating library file: .libs/libgmx.dll.a >> collect2: ld returned 1 exit status >> make[3]: *** [libgmx.la <http://libgmx.la>] Error 1 >> >> make[3]: Leaving directory >> `/cygdrive/d/softwares/bioinformatics/gromacs-4.5.4/s >> rc/gmxlib' >> make[2]: *** [install-recursive] Error 1 >> make[2]: Leaving directory >> `/cygdrive/d/softwares/bioinformatics/gromacs-4.5.4/s >> rc/gmxlib' >> make[1]: *** [install-recursive] Error 1 >> make[1]: Leaving directory >> `/cygdrive/d/softwares/bioinformatics/gromacs-4.5.4/s >> rc' >> make: *** [install-recursive] Error 1 >> >> and* make links command gives the following error:* >> * >> > > Certainly "make links" will fail if the actual installation failed. > > -Justin > > * >> >> * >> $ make links >> cd /usr/local/gromacs/bin && programs=`ls` && cd /usr/local/bin && \ >> for i in $programs; do \ >> (test ! -f $i && ln -s /usr/local/gromacs/bin/$i . ; exit 0); \ >> done >> /bin/sh: line 0: cd: /usr/local/gromacs/bin: No such file or directory >> make: *** [links] Error 1 >> >> Can anyone de-code thsi error and help me how should I successfully >> proceed for the same. >> Thanks in advance. >> >> Monisha * >> >> >> >> > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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