Hi
I am trying to install gromacs on a windows laptop with rhcygwin. I am doing
it as administrator
and I ran into the same problem when I tried installing fftw-3.2.2.
$ ./configure --enable-sse --enable-float
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... i686-pc-cygwin
checking host system type... i686-pc-cygwin
checking for gcc... gcc
checking for C compiler default output file name...
configure: error: in `/cygdrive/c/fftw-3.2.2':
configure: error: C compiler cannot create executables
See `config.log' for more details.
The config.log file is attached.
I read the config.log file but am unable to figure out what the problem is. It
shows
the right version of gcc installed and configure appears to find it.
Thanks
Vijaya
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by fftw configure 3.2.2, which was
generated by GNU Autoconf 2.63. Invocation command line was
$ ./configure --enable-sse --enable-float
## --------- ##
## Platform. ##
## --------- ##
hostname = himalaya
uname -m = i686
uname -r = 1.8.2(0.230/5/3)
uname -s = CYGWIN_NT-6.1-WOW64
uname -v = 2010-09-01 14:47
/usr/bin/uname -p = unknown
/bin/uname -X = unknown
/bin/arch = i686
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = unknown
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
PATH: /cygdrive/c/Program Files/Common Files/Microsoft Shared/Windows Live
PATH: /cygdrive/c/Windows/system32
PATH: /cygdrive/c/Windows
PATH: /cygdrive/c/Windows/System32/Wbem
PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0/
PATH: /cygdrive/c/Program Files/Intel/WiFi/bin/
PATH: /cygdrive/c/Program Files/Common Files/Intel/WirelessCommon/
PATH: /cygdrive/c/Program Files/WIDCOMM/Bluetooth Software/
PATH: /cygdrive/c/Program Files/WIDCOMM/Bluetooth Software/syswow64
PATH: /cygdrive/c/Program Files (x86)/Common Files/Roxio Shared/DLLShared/
PATH: /cygdrive/c/Program Files (x86)/Common Files/Roxio Shared/DLLShared/
PATH: /cygdrive/c/Program Files (x86)/Common Files/Roxio Shared/12.0/DLLShared/
PATH: /cygdrive/c/Program Files (x86)/Hewlett-Packard/HP SimplePass Identity
Protection/x64
PATH: /cygdrive/c/Program Files (x86)/Hewlett-Packard/HP SimplePass Identity
Protection/
PATH: /cygdrive/c/Program Files/MATLAB/R2010bSP1/runtime/win64
PATH: /cygdrive/c/Program Files/MATLAB/R2010bSP1/bin
PATH: /usr/lib/lapack
## ----------- ##
## Core tests. ##
## ----------- ##
configure:2188: checking for a BSD-compatible install
configure:2256: result: /usr/bin/install -c
configure:2267: checking whether build environment is sane
configure:2310: result: yes
configure:2335: checking for a thread-safe mkdir -p
configure:2374: result: /usr/bin/mkdir -p
configure:2387: checking for gawk
configure:2403: found /usr/bin/gawk
configure:2414: result: gawk
configure:2425: checking whether make sets $(MAKE)
configure:2447: result: yes
configure:2634: checking whether to enable maintainer-specific portions of
Makefiles
configure:2643: result: no
configure:2693: checking build system type
configure:2711: result: i686-pc-cygwin
configure:2733: checking host system type
configure:2748: result: i686-pc-cygwin
configure:3181: checking for gcc
configure:3197: found /usr/bin/gcc
configure:3208: result: gcc
configure:3440: checking for C compiler version
configure:3448: gcc --version >&5
gcc (GCC) 4.3.4 20090804 (release) 1
Copyright (C) 2008 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:3452: $? = 0
configure:3459: gcc -v >&5
Using built-in specs.
Target: i686-pc-cygwin
Configured with:
/gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4/configure
--srcdir=/gnu/gcc/releases/respins/4.3.4-3a/gcc4-4.3.4-3/src/gcc-4.3.4
--prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin
--libexecdir=/usr/lib --datadir=/usr/share --localstatedir=/var
--sysconfdir=/etc --infodir=/usr/share/info --mandir=/usr/share/man
--datadir=/usr/share --infodir=/usr/share/info --mandir=/usr/share/man -v
--with-gmp=/usr --with-mpfr=/usr --enable-bootstrap
--enable-version-specific-runtime-libs --with-slibdir=/usr/bin
--libexecdir=/usr/lib --enable-static --enable-shared --enable-shared-libgcc
--disable-__cxa_atexit --with-gnu-ld --with-gnu-as --with-dwarf2
--disable-sjlj-exceptions
--enable-languages=ada,c,c++,fortran,java,objc,obj-c++ --disable-symvers
--enable-libjava --program-suffix=-4 --enable-libgomp --enable-libssp
--enable-libada --enable-threads=posix --with-arch=i686 --with-tune=generic
--enable-libgcj-sublibs CC=gcc-4 CXX=g++-4 CC_FOR_TARGET=gcc-4
CXX_FOR_TARGET=g++-4 GNATMAKE_FOR_TARGET=gnatmake GNATBIND_FOR_TARGET=gnatbind
--with-ecj-jar=/usr/share/java/ecj.jar
Thread model: posix
gcc version 4.3.4 20090804 (release) 1 (GCC)
configure:3463: $? = 0
configure:3470: gcc -V >&5
gcc: '-V' option must have argument
configure:3474: $? = 1
configure:3497: checking for C compiler default output file name
configure:3519: gcc conftest.c >&5
configure:3523: $? = 1
configure:3561: result:
configure: failed program was:
| /* confdefs.h. */
| #define PACKAGE_NAME "fftw"
| #define PACKAGE_TARNAME "fftw"
| #define PACKAGE_VERSION "3.2.2"
| #define PACKAGE_STRING "fftw 3.2.2"
| #define PACKAGE_BUGREPORT "f...@fftw.org"
| #define PACKAGE "fftw"
| #define VERSION "3.2.2"
| #define FFTW_ENABLE_ALLOCA 1
| #define FFTW_SINGLE 1
| #define BENCHFFT_SINGLE 1
| #define HAVE_SSE 1
| /* end confdefs.h. */
|
| int
| main ()
| {
|
| ;
| return 0;
| }
configure:3567: error: in `/cygdrive/c/fftw-3.2.2':
configure:3570: error: C compiler cannot create executables
See `config.log' for more details.
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=i686-pc-cygwin
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_MPICC_set=
ac_cv_env_MPICC_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_host=i686-pc-cygwin
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/usr/bin/mkdir
ac_cv_prog_AWK=gawk
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_make_make_set=yes
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /cygdrive/c/fftw-3.2.2/missing --run aclocal-1.10'
ALLOCA=''
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE=''
AMTAR='${SHELL} /cygdrive/c/fftw-3.2.2/missing --run tar'
AR=''
AS=''
AUTOCONF='${SHELL} /cygdrive/c/fftw-3.2.2/missing --run autoconf'
AUTOHEADER='${SHELL} /cygdrive/c/fftw-3.2.2/missing --run autoheader'
AUTOMAKE='${SHELL} /cygdrive/c/fftw-3.2.2/missing --run automake-1.10'
AWK='gawk'
CC='gcc'
CCDEPMODE=''
CFLAGS=''
CODELET_OPTIM=''
COMBINED_THREADS_FALSE=''
COMBINED_THREADS_TRUE=''
CPP=''
CPPFLAGS=''
CYGPATH_W='cygpath -w'
DEFS=''
DEPDIR=''
DLLTOOL=''
DSYMUTIL=''
DUMPBIN=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP=''
EXEEXT=''
F77=''
FFLAGS=''
FGREP=''
FLIBS=''
GREP=''
HAVE_CELL_FALSE=''
HAVE_CELL_TRUE='#'
HAVE_SIMD_FALSE='#'
HAVE_SIMD_TRUE=''
INSTALLED_OCAMLC='/usr/local/bin/ocamlc'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD=''
LDFLAGS=''
LDOUBLE_FALSE=''
LDOUBLE_TRUE='#'
LIBOBJS=''
LIBS=''
LIBTOOL=''
LIPO=''
LN_S=''
LTLIBOBJS=''
MAINT='#'
MAINTAINER_MODE_FALSE=''
MAINTAINER_MODE_TRUE='#'
MAKEINFO='${SHELL} /cygdrive/c/fftw-3.2.2/missing --run makeinfo'
MKDIR_P='/usr/bin/mkdir -p'
MPICC=''
MPILIBS=''
MPIRUN=''
MPI_FALSE=''
MPI_TRUE=''
NM=''
NMEDIT=''
OBJDUMP=''
OBJEXT=''
OCAMLC=''
OCAMLCFLAGS=''
OCAMLDEFS=''
OCAMLDEP=''
OCAMLLDFLAGS=''
OCAMLOPT=''
OCAMLOPTCFLAGS=''
OPENMP_CFLAGS=''
OTOOL64=''
OTOOL=''
PACKAGE='fftw'
PACKAGE_BUGREPORT='f...@fftw.org'
PACKAGE_NAME='fftw'
PACKAGE_STRING='fftw 3.2.2'
PACKAGE_TARNAME='fftw'
PACKAGE_VERSION='3.2.2'
PATH_SEPARATOR=':'
POW_LIB=''
PRECISION='s'
PREC_SUFFIX='f'
PRTDIAG=''
PTHREAD_CC=''
PTHREAD_CFLAGS=''
PTHREAD_LIBS=''
RANLIB=''
SED=''
SET_MAKE=''
SHARED_VERSION_INFO='5:4:2'
SHELL='/bin/sh'
SIMD_CFLAGS=''
SINGLE_FALSE='#'
SINGLE_TRUE=''
SMP_FALSE=''
SMP_TRUE=''
STRIP=''
TARGET_OCAMLBIN='/usr/local/bin'
TARGET_OCAMLLIB='/usr/local/lib/fftw'
TARGET_OCAMLRUN='/usr/local/bin/ocamlrun'
THREADLIBS=''
VERSION='3.2.2'
ac_ct_CC='gcc'
ac_ct_DUMPBIN=''
ac_ct_F77=''
acx_pthread_config=''
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE=''
am__include=''
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='i686-pc-cygwin'
build_alias=''
build_cpu='i686'
build_os='cygwin'
build_vendor='pc'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='i686-pc-cygwin'
host_alias=''
host_cpu='i686'
host_os='cygwin'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='$(SHELL) /cygdrive/c/fftw-3.2.2/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
lt_ECHO='echo'
mandir='${datarootdir}/man'
mkdir_p='/usr/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
#define PACKAGE_NAME "fftw"
#define PACKAGE_TARNAME "fftw"
#define PACKAGE_VERSION "3.2.2"
#define PACKAGE_STRING "fftw 3.2.2"
#define PACKAGE_BUGREPORT "f...@fftw.org"
#define PACKAGE "fftw"
#define VERSION "3.2.2"
#define FFTW_ENABLE_ALLOCA 1
#define FFTW_SINGLE 1
#define BENCHFFT_SINGLE 1
#define HAVE_SSE 1
configure: exit 77
--
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