Hi, in most cases the easiest way is to regenerate the topology in pdb2gmx. If that is not possible for some reason, you can use a version of psfgen we developed in our lab: http://www.benlabs.net/psfgen+top/Overview.html
BTW: Please don't cross-post to both gmx-users and gmx-developers. Roland On Thu, Mar 10, 2011 at 9:28 AM, Francesco Oteri <francesco.ot...@gmail.com> wrote: > Dear gromacs users, > I need to convert namd topology (.psf file) in gromacs format (.top). > Any suggestion? > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309 -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
