Dear Dr.Justin Is there any criteria for choosing vdwradii for carbon atoms? Because I have changed it from 0.15 to 0.375,but there were afew water molecules,it is difficult to delete them manually. then I decided to increase the vdwradii to 0.450 it is better now but i think the gap between water surface and lipids surface is a little big,although there are still a few water molecules between lipids. But this work can reduce the interactions between water molecules and my system in the next steps.
Am I right? thanks in advance mohsen
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