Hello,
I am attempting to add 8-oxo-dG (8-Oxo-2'-deoxyguanosine) to the amber99sb
force field. This is a simple modification of the H8 hydrogen on a guanine to
an oxygen atom. I have followed the instructions on the gromacs site on adding
residues.
However the new nucleotide will not work, it will not attach to the adjacent
nucleotides in the sequence.
Any help would be very much appreciated, if any more information is required
please let me know.
Best Regards
William StebbedsCranfield UniversityUK
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