Thanks very much, Dr. Kutzner! On Tue, Feb 1, 2011 at 9:14 PM, Carsten Kutzner <ckut...@gwdg.de> wrote:
> Hi Vigneshwar, > > the problem is fixed now in the release-4-0-patches branch. > > Carsten > > > On Feb 1, 2011, at 2:00 PM, Carsten Kutzner wrote: > > > Hi, > > > > apparently this bug fix made it to 4.5, but not to 4.0. > > I will apply the fix also there. > > > > Carsten > > > > On Feb 1, 2011, at 1:58 PM, Justin A. Lemkul wrote: > > > >> > >> > >> Vigneshwar Ramakrishnan wrote: > >>> Dear All, > >>> I am using the gromacs 4.0.7 version and I was trying to calculate the > momentum autocorrelation function by using the -m flag. However, I get a > segmentation fault as follows: > >>> trn version: GMX_trn_file (double precision) > >>> Reading frame 0 time 0.000 Segmentation fault > >>> When I don't use the -m option, I have no problem. > >>> Upon searching the userslist, I found this thread: > http://lists.gromacs.org/pipermail/gmx-users/2010-October/054813.html and > a patch, but I don't find any related bugs reported elsewhere. So, I am just > wondering if I sould go ahead and use the patch or if there could be > something else that is wrong. Will appreciate any kind of pointers. > >> > >> Either apply the patch or upgrade to a newer version of Gromacs that > contains this bug fix. > >> > >> -Justin > >> > >>> Sincerely, Vignesh > >>> -- > >>> R.Vigneshwar > >>> Graduate Student, > >>> Dept. of Chemical & Biomolecular Engg, > >>> National University of Singapore, > >>> Singapore > >>> "Strive for Excellence, Never be satisfied with the second Best!!" > >>> I arise in the morning torn between a desire to improve the world and a > desire to enjoy the world. This makes it hard to plan the day. (E.B. White) > >> > >> -- > >> ======================================== > >> > >> Justin A. Lemkul > >> Ph.D. Candidate > >> ICTAS Doctoral Scholar > >> MILES-IGERT Trainee > >> Department of Biochemistry > >> Virginia Tech > >> Blacksburg, VA > >> jalemkul[at]vt.edu | (540) 231-9080 > >> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > >> > >> ======================================== > >> -- > >> gmx-users mailing list gmx-users@gromacs.org > >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >> Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >> Please don't post (un)subscribe requests to the list. Use the www > interface or send it to gmx-users-requ...@gromacs.org. > >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > > > > -- > > Dr. Carsten Kutzner > > Max Planck Institute for Biophysical Chemistry > > Theoretical and Computational Biophysics > > Am Fassberg 11, 37077 Goettingen, Germany > > Tel. +49-551-2012313, Fax: +49-551-2012302 > > http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne > > > > > > > > > > -- > > gmx-users mailing list gmx-users@gromacs.org > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to gmx-users-requ...@gromacs.org. > > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > > > -- > Dr. Carsten Kutzner > Max Planck Institute for Biophysical Chemistry > Theoretical and Computational Biophysics > Am Fassberg 11, 37077 Goettingen, Germany > Tel. +49-551-2012313, Fax: +49-551-2012302 > http://www.mpibpc.mpg.de/home/grubmueller/ihp/ckutzne > > > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- R.Vigneshwar Graduate Student, Dept. of Chemical & Biomolecular Engg, National University of Singapore, Singapore "Strive for Excellence, Never be satisfied with the second Best!!" I arise in the morning torn between a desire to improve the world and a desire to enjoy the world. This makes it hard to plan the day. (E.B. White)
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