Hi Joyce, In pymol use 'set all_states'
Cheers, Tsjerk On Jan 22, 2011 8:30 AM, "Kwee Hong" <jestan1...@yahoo.com> wrote: Hi, I was trying to do some analysis following John's "GROMACS tutorial for solvation study of spider toxin peptide". I'm using GROMACS-4.5.3 and my command line for g_confrms is g_confrms -f1 1OMB.pdb -f2 md.gro -o fit_wet.pdb The program calculated the RMSD sucessfully and fit_wet.pdb was generated. Yet, when i tried to visualise fit_wet.pdb using VMD, the structure is obviously in a mess. And when I tried it out with pymol, I can only visualised one model. Model 2 did not appear. I wonder would it be the pdb format generated by g_confrms is not the standard pdb format and had caused VMD and final failed to read them? Herein, I attached part of the pdb file generated by fit_wet.pdb. Any insight is welcomed. Thanks, Joyce -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
