bharat gupta wrote:
Hi,
After completing my simulation , I have generated the potential.xvg
file and also I generated the average of the potential for the whole
simulation using g_analyze. But when I open the file average.avg I shows
me the same graph as that of potential.xvg but with red color.. What I
want is a red line averaging the potential value in the potential graph
as given in the lysozyme tutorial.
Red indicates the second data set loaded by xmgrace, which in your case sounds
like it is identical to the first. The running average you refer to was not
generated by Gromacs, rather it is an xmgrace function. Data -> Transformations
-> Running averages.
-Justin
--
Bharat
Ph.D. Candidate
Room No. : 7202A, 2nd Floor
Biomolecular Engineering Laboratory
Division of Chemical Engineering and Polymer Science
Pusan National University
Busan -609735
South Korea
Lab phone no. - +82-51-510-3680, +82-51-583-8343
Mobile no. - 010-5818-3680
E-mail : monu46...@yahoo.com <mailto:monu46...@yahoo.com>
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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