Dear All:I am trying to build a lipid bilayer made of DMPC (Dimyristoylphosphatidylcholine) surrounding a putative membrane channel. Everything goes well until I come across with the use of pdb2gmx and further on to the use of gromp, where I realized that I need to add some information about DMPC, information that is supposed to be in the rtp format.
I have no idea how to build such rtp file for DMPC. I have read and practiced with all tutorials about the construction of lipid bilayer with GROMACS. I have also read the relevant information about rtp files in the GROMACS Manual. However, I still cannot figure out how to do this.
I will appreciate very much any help provided. I am stuck and would like to learn how to create an rtp file from scratch, which I am sure I need to do more than once during this project...
Much obliged, Ramon Garduno
<<attachment: ramon.vcf>>
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