Dear all, I am just a newbie to Gromacs so sorry for being naive with my questions...
I would like to yield electron density profiles out of different trajectories of membranes simulated with NAMD and last CHARMM forcefield (all_36_lipid_cholesterol). I first tried to use pdb2gmx in order to generate a GROMACS topology file that I could use for generating the .tpr file needed for g_density. Well, I did not manage but is this the proper way though? Also, so far all my trajectories are .dcd files; does the g_density function needs a .pdb file per frame? Otherwise, is it possible to directly convert .dcd files into the gromacs .xtc ones? On another note, would anyone know where could I get proper topology and parameter files of sphingomyelin? Many thanks in advance! Ramon
-- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
