Hello, I am trying to calculate g_sdf for my system (ionic liquids + water).
I interested in distribution of anions and waters around cations. I used following command g_sdf -f 3.trr -n emi-etso4-64-no.ndx -s 3.tpr -o -r -mode 2 I found all the corrdinates in refmol.gro are zero. I calculated distribution of anions around cations g_sdf -f 3.trr -n emi-etso4-64-no.ndx -s 3.tpr -o -r I got proper corrdinates in refmol.gro. Why I am getting corrdinates zero for mode 2. Nilesh -- gmx-users mailing list gmx-users@gromacs.org http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
