Hi,

Upgrade to 4.5.x and see if the problem persists. I've hacked g_hbond quite a bit since 4.0.5.

Erik

leila karami skrev 2010-12-18 14.02:
Dear gromacs users

I'm using gromacs 4.0.5. with following command:

g_hbond -f .xtc -s .tpr -n .ndx -num -g -hbn.

my system contains protein, dna and water.

when I use above command for protein and dna, there is no problem. segmentation fault is only for protein and water.

--
Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group



--
-----------------------------------------------
Erik Marklund, PhD student
Dept. of Cell and Molecular Biology, Uppsala University.
Husargatan 3, Box 596,    75124 Uppsala, Sweden
phone:    +46 18 471 4537        fax: +46 18 511 755
er...@xray.bmc.uu.se    http://folding.bmc.uu.se/

--
gmx-users mailing list    gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Reply via email to