pawan raghav wrote:
I am postin ths question second time so please solve this issue
g_anaeig generated numbers of c-alpha or protein structures through -extr
extreme.pdb. The bash shell show numbers of eigenvector structures starting
from first to last frames are as follows
eigenvector Minimum Maximum
value time value time
1 4.880467 14148.0 7.747218 12501.0
2 1.637421 13926.0 4.344063 13110.0
3 -0.074393 12567.0 2.745826 14166.0
4 0.940240 12618.0 5.181283 14265.0
5 -2.760566 14760.0 -0.107564 12789.0
6 0.394184 12627.0 2.693520 14997.0
First column shows vectors, but what are the values in second column? Are
they represents energy values in kJ/mol in second and fourth column?
A bit of advice: repeated posting of the same question with no additional
information or evidence that you've tried to learn anything new is generally
regarded as spam and gets ignored.
Generally, it is a good idea to know what your analysis is doing prior to
running commands. It will save you a great deal of stress later trying to sift
through a mountain of mysterious information.
I had assumed someone would have posted this already, but seeing as they
haven't, I sifted through my bookmarks and dug up this URL:
http://nmr.chem.uu.nl/~tsjerk/course/molmod/analysis1.html
You should find the end of the PCA section particularly applicable.
-Justin
--
Pawan
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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