Dear Maximiliano I reproduce my .pqr file and it has coordinate files too. I performed what Tsjerk said and I could convert pqr tp pdb file successfully Thanks for all Mohsen
On Thu, Dec 2, 2010 at 6:00 PM, Maximiliano Figueroa <maxfi...@gmail.com>wrote: > Hi, > > if your pqr file has not coordinates, is impossible convert to PDB. What is > the format of the original file?. > However, the PQR file normally has more atoms because add hydrogens. > > Can you paste a little part of your pqr and pdb? > > Best regards > > Maxi > > On Thu, Dec 2, 2010 at 3:24 PM, mohsen ramezanpour < > ramezanpour.moh...@gmail.com> wrote: > >> Dear Tsjerk >> >> some information exist in pdb file which are not peresent in pqr and vise >> versa. >> I want to convert them to eachother in a way to conclude one's information >> to the other file. >> as you know a typical pdb file has a definite colomns and each of them >> present a definite charachter(for example charge,X-coordinate,...) >> my pqr has more atoms than original pdb,but It dosen't have any >> coordinates. >> besides converting as you said dosen't solve the problem,because PYMOL can >> not read this converted file.it needs a file who has included atoms >> coordinates >> >> thanks in advance for your reply >> Mohsen >> >> On Thu, Nov 25, 2010 at 9:44 PM, Tsjerk Wassenaar <tsje...@gmail.com>wrote: >> >>> Hey, >>> >>> For this particular conversion you can also usually use 'mv': >>> >>> mv file.pqr file.pdb >>> >>> Btw, many of these file types are human readable. It usually helps quite >>> a bit to look at the files and get acquainted with the file formats. >>> >>> Cheers, >>> >>> Tsjerk >>> >>> On Nov 22, 2010 12:42 PM, "Mark Abraham" <mark.abra...@anu.edu.au> >>> wrote: >>> >>> On 22/11/2010 10:16 PM, mohsen ramezanpour wrote: > > Dear All > > I had >>> a pdb file who was incompl... >>> Ask it for a pdb format. There should be no tool that builds atoms that >>> cannot write a standard file format like PDB - particularly as PQR is a >>> derivative of PDB. >>> >>> Oh, and this is a bit off-topic for this list :-) >>> >>> Mark >>> -- >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the www >>> interface or send it to gmx-users-requ...@gromacs.org. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >>> >>> -- >>> >>> gmx-users mailing list gmx-users@gromacs.org >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to gmx-users-requ...@gromacs.org. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >> >> >> -- >> >> gmx-users mailing list gmx-users@gromacs.org >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to gmx-users-requ...@gromacs.org. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > > -- > gmx-users mailing list gmx-users@gromacs.org > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to gmx-users-requ...@gromacs.org. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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