leila karami wrote:
Dear Justin
I enclosed the group name Protein-H and DNA-H in quotes ' ' and " ".
waterO = group SOL and name OW;
heavy1 = group 'Protein-H';
heavy2 = group 'DNA-H';
inter = waterO and within 0.3 of heavy1 and within 0.3 of heavy2;
inter;
waterO = group SOL and name OW;
heavy1 = group "Protein-H";
heavy2 = group "DNA-H";
inter = waterO and within 0.3 of heavy1 and within 0.3 of heavy2;
inter;
but in both of states again:
selection parser: syntax error
heavy1 = group 'Protein-H''lection '
-------------------------------------------------------
Program g_select, VERSION 4.5.1
Source code file: trajana.c, line: 1310
Please upgrade to version 4.5.3 and try again. The syntax I described above
works correctly for me.
-Justin
Input error or input inconsistency:
selection(s) could not be parsed
For more information and tips for troubleshooting, please check the GROMACS
website at http://www.gromacs.org/Documentation/Errors
--
Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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